String line;
            while ((line = reader.readLine()) != null) {
                line = line.replaceFirst("\\s*\\* ?", "");
                if (line.startsWith("@")) {
                    // Ignore the tag section of the comment
                    break;
                }
                builder.append(line);
                builder.append("\n");
            }

            long id = 0;
            String line = null;
            while ((line = reader.readLine()) != null) {
                if (line.length() == 0 || line.charAt(0) == '#') {
                    if (updater != null) {
                        updater.write(line);
                    }
                    continue; // ignore empty lines and comments
                }

            long id = 0;
            String line = null;
            while ((line = reader.readLine()) != null) {
                if (line.length() == 0 || line.charAt(0) == '#') {
                    if (updater != null) {
                        updater.write(line);
                    }
                    continue; // ignore empty lines and comments
                }

            }
        }

        private String getPackageName(File file) throws IOException {
            try (Stream<String> lines = Files.lines(file.toPath())) {
                String packageLine = lines.filter(line -> line.startsWith("package"))
                    .findFirst()
                    .orElseThrow(() -> new IOException("Can't find package definition in file " + file));

            final String[] lines = value.split("[\r\n]");
            for (final String line : lines) {
                if (StringUtil.isNotBlank(line)) {
                    final int pos = line.indexOf('=');
                    if (pos == 0) {
                        paramMap.put("unknown." + (unknownKey + 1), line.substring(pos + 1).trim());
                        unknownKey++;

            long id = 0;
            String line = null;
            while ((line = reader.readLine()) != null) {
                // Remove comments
                final String replacedLine = line.replaceAll("#.*$", StringUtil.EMPTY).trim();

                // Skip empty lines or comment lines
                if (replacedLine.length() == 0) {
                    if (updater != null) {

            content.subList(0, markerPos)
        } else {
            emptyList()
        }

        markdownFile.bufferedWriter().use {
            PrintWriter(it).run {
                for (line in head) {
                    println(line)
                }
                graph(elements.get())
            }
        }
    }

    private fun PrintWriter.graph(elements: List<ArchitectureElement>) {
        println(

        psOutput.forEach(line -> {
            Matcher commandLineArgsMatcher = commandLineArgsPattern.matcher(line);
            Matcher pidMatcher = pidPattern.matcher(line);
            if (commandLineArgsMatcher.find() && pidMatcher.find()) {
                String pid = pidMatcher.group(1);
                if (!MY_PID.equals(pid)) {
                    action.accept(pid, line);
                }
            }

        List<String> lines = getStdoutLines(new String[] {"git", "branch", "-r", "--contains", commit});
        List<String> out = new ArrayList<>();
        for (String line : lines) {
            String s = line.replace("*", "").trim();
            if (!s.isEmpty()) {
                out.add(s);
            }
        }

            long id = 0;
            String line = null;
            while ((line = reader.readLine()) != null) {
                if (line.length() == 0 || line.charAt(0) == '#') {
                    if (updater != null) {
                        updater.write(line);
                    }
                    continue; // ignore empty lines and comments
                }

                String[] inputs;