int counter = 0
        source.filter { File f -> f.name.endsWith(".java") || f.name.endsWith(".groovy") }.each { File f ->
            parse(f, repository)
            counter++
        }

        //updating/modifying the metadata and making sure every type reference across the metadata is fully qualified
        //so, the superClassName, interfaces and types needed by declared properties and declared methods will have fully qualified name