assertTrue("Should have line4", thread.contains("line4"));
        assertTrue("Should have line5", thread.contains("line5"));
    }

    @Test
    public void test_emptyInputStream() throws IOException, InterruptedException {
        Process mockProcess = createMockProcess("");
        JobProcess jobProcess = new JobProcess(mockProcess);

        InputStreamThread thread = jobProcess.getInputStreamThread();

        thread.join(1000);

        assertEquals("All lines should be processed", 5000, receivedLines.size());
        assertEquals("First line", "Line number 0", receivedLines.get(0));
        assertEquals("Last line", "Line number 4999", receivedLines.get(4999));
    }

    @Test
    public void test_run_concurrentAccess() throws InterruptedException {
        String input = "concurrent1\nconcurrent2\nconcurrent3";

            // Verify content structure
            boolean hasThreadLine = lines.stream().anyMatch(line -> line.startsWith("Thread:"));
            boolean hasStackTraceLine = lines.stream().anyMatch(line -> line.startsWith("\tat "));

            assertTrue("Should contain thread information", hasThreadLine);
            assertTrue("Should contain stack trace information", hasStackTraceLine);

        String[] inputs = { "input" };
        CharMappingItem item = new CharMappingItem(1L, inputs, "output");

        // Test newline replacement in setNewOutput
        item.setNewOutput("line1\nline2\nline3");
        assertEquals("line1 line2 line3", item.getNewOutput());
    }

    @Test
    public void test_setNewOutput_withNull() {
        String[] inputs = { "input" };

        val lines = content.substring(startAfterIntro).lines()
        var pos = startAfterIntro
        var pastBlankLine = false
        for (line in lines) {
            if (pastBlankLine && !line.startsWith("- ") && line.isNotBlank()) {
                return pos
            }
            if (line.isNotBlank()) {
                pastBlankLine = true
            }

    }

    private static String readWrapperVersion() throws IOException {
        Path props = Paths.get("gradle/wrapper/gradle-wrapper.properties");
        List<String> lines = Files.readAllLines(props, StandardCharsets.UTF_8);
        String distributionUrl =
            lines.stream()
                .map(String::trim)
                .filter(l -> !l.isEmpty() && !l.startsWith("#"))
                .filter(l -> l.startsWith("distributionUrl"))

    private static Map<String, String> readProperties(Path file) throws IOException {
        Map<String, String> out = new LinkedHashMap<>();
        List<String> lines = Files.readAllLines(file, StandardCharsets.UTF_8);
        for (String line : lines) {
            String trimmed = line.trim();
            if (trimmed.isEmpty() || trimmed.startsWith("#") || trimmed.startsWith("!")) {
                continue;
            }

            }
        }

        private String getPackageName(File file) throws IOException {
            try (Stream<String> lines = Files.lines(file.toPath())) {
                String packageLine = lines.filter(line -> line.startsWith("package"))
                    .findFirst()
                    .orElseThrow(() -> new IOException("Can't find package definition in file " + file));

            content.subList(0, markerPos)
        } else {
            emptyList()
        }

        markdownFile.bufferedWriter().use {
            PrintWriter(it).run {
                for (line in head) {
                    println(line)
                }
                graph(elements.get())
            }
        }
    }

    private fun PrintWriter.graph(elements: List<ArchitectureElement>) {
        println(

        List<String> lines = getStdoutLines(new String[] {"git", "branch", "-r", "--contains", commit});
        List<String> out = new ArrayList<>();
        for (String line : lines) {
            String s = line.replace("*", "").trim();
            if (!s.isEmpty()) {
                out.add(s);
            }
        }